Rich Gluten Free Chocolate Muffins

Prep Time : 15 minutes

Cook Time : 18 minutes

These gluten free chocolate muffins have the big, bakery-style dome that everyone loves, plus tons of rich chocolate flavor. They’re so satisfying for breakfast!

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These gluten free chocolate muffins are tender and chocolatey, but clearly muffins and not cupcakes, so enjoy them first thing in the morning, guilt-free! Since they’re made without butter, they’re also easily made dairy free, too.

Fingers holding chocolate muffin with liner peeled down

What makes these gluten free chocolate muffins special?

Between the melted dark chocolate in the batter, and the mixture of a neutral oil and rich cocoa powder, these gluten free chocolate muffins are super moist, tender, and richly satisfying. These are not the sort of muffins you want to offer to someone who doesn’t love chocolate, though!

But assuming you have an audience of chocolate fans, these muffins will not disappoint. They’re made easily by mixing together all the wet ingredients, from melted chocolate through to buttermilk, first, then mixing them into the few dry ingredients until just combined.

We start the baking with some extra heat to coax that chocolate batter up into a craggy dome with lots of muffin-top texture, then reduce it almost right away so nothing burns. Since these muffins are so dark and rich, you wouldn’t know your muffins were burning in a too-hot oven until it was too late to save them!

Chocolate muffin broken in half on wire rack

Notes on gluten free chocolate muffin ingredients

  • Baking chocolate – The baking chocolate that is melted and mixed into this chocolate muffin batter can be dark (which usually contains between 50% and 90% cocoa solids, in addition to cocoa butter and sugar) or semi-sweet (a type of dark chocolate, one that is usually toward the lower end of cocoa solids and less sugar than milk chocolate). Whatever type you choose, be sure to melt it gently in a double boiler or in a microwave at reduced power so it doesn’t burn or seize.
  • Neutral oil – Rather than baking with butter, like we do in our classic mix-in gluten free muffin recipe, we are using oil as fat here since it has less moisture and keeps the muffins more moist. You can use any plain oil with a neutral flavor, like canola, vegetable, grapeseed, or peanut oil, so you add tenderness and mouth feel, but not flavor.
  • Unsweetened cocoa powder – Adding the cocoa powder to the melted chocolate and oil mixture, while the melted chocolate is still warm, helps to bloom the cocoa powder, which brings out its rich chocolate flavor. I use Rodelle brand Dutch-processed cocoa powder for its extra richness, but natural cocoa powder works fine here, too.
  • Sugars – Using half granulated sugar and half light brown sugar adds tenderness, extra moisture, and of course sweetness.
  • Egg – Using one single egg helps keep these muffins moist and tender without the dryness that too much egg white in the batter can create.
  • Buttermilk – Commercial buttermilk has thickness and richness that helps tenderize and moisten this chocolate muffin batter. Don’t replace it with plain milk that’s been soured with a little lemon juice or vinegar, which won’t do the same for your muffins.
  • Gluten free flour blend – I usually use Better Batter’s classic blend here, which is a really well-balanced, smooth, reliable gluten free flour blend. It already contains xanthan gum, so definitely don’t add more if you use Better Batter or another of my recommended all purpose gluten free flour blends that already contains it.
  • Baking powder – Baking powder is double-acting, which means that it is activated when it gets hydrated by being adding to liquid in the recipe, and again in the oven. It provides rise and lift in these muffins.
  • Baking soda – Baking soda also provides some lift, but it’s also responsible for helping to brown your muffins in the oven. Plus, if you are using natural cocoa powder, it will neutralize the additional acid in your cocoa.
  • Salt – Salt helps balance sweetness, and brings out the chocolate flavor of these bakery-style chocolate muffins.
  • Chocolate chips – I like to use semi-sweet chocolate chips, but if you know that you’re serving your muffins who can only abide the darkest of chocolate, try using dark chocolate chips. Or switch it up and use white chocolate chips or even peanut butter or butterscotch chips (just make sure they’re gluten free, though, since some are not!).
Chocolate muffin batter with chocolate chips in blue mixing bowl with black spoon

Tips for making the best chocolate muffins gluten free

Keep your melted chocolate warm

Bring out the richest flavor of your unsweetened cocoa powder by mixing the oil and then cocoa powder into your melted chocolate before it’s cooled down. That will help bloom the cocoa powder, which enhances its chocolate flavor.

Use an oven thermometer during baking

Most ovens drift out of calibration, and rather than paying to have them calibrated regularly, just use a simple, inexpensive analog oven thermometer to gauge your oven’s temperature. If your oven runs hot here, these muffins are so dark in color that you won’t know they’re beginning to burn until it’s too late.

Turn the oven temperature down after the first 5 minutes

The reason to start baking at 375°F, which is higher than the usual cake-baking temperature of 350°F, is to encourage your muffins to rise quickly at the start. That’s how you get a nice, round dome on top. After those first 5 minutes, though, turn the temperature down 25°F to 350°F to finish baking or your muffins may burn.

Fill those muffin wells all the way

All muffin tin wells have different sizes and even shapes. There’s just no way to know for sure exactly how much batter you’ll need to fill your muffin wells unless we’re all using my same basic Wilton 12-cup standard muffin tin. So be sure to fill your wells all the way, and if your muffin tin is larger than most and you can’t make a full 12 muffins, it’s worth making fewer muffins to get those big, beautiful bakery-style gf chocolate muffins!

Raw chocolate muffin batter in 6-cup metal muffin tin
Baked chocolate muffins in metal tin with some on their sides

Gluten free chocolate muffins: ingredients and potential substitutions

Gluten free dairy free chocolate muffins

The dairy in these muffins is in the form of buttermilk, and possibly chocolate. Most dark or even semi-sweet baking chocolate will be dairy-free and gluten-free, but check labels and make phone calls if necessary to be sure.

In place of buttermilk, you can use half non-dairy plain yogurt or sour cream and half unsweetened nondairy milk. You can also use that combination with dairy if you can have dairy, but don’t happen to have buttermilk on hand.

Gluten free egg free chocolate muffins

In place of the egg, try using one “chia eggs.” One “chia egg” is made by combining 1 tablespoon ground white chia seeds with 1 tablespoon lukewarm water. Mix in a small bowl and allow the mixture to sit until it gels.

One chocolate muffin with peeled liner on small white plate

FAQs

How are these gf chocolate muffins different from chocolate cupcakes?

Muffins and cupcakes are all baked in muffin tins, so you’re naturally going to compare them to one another! These are muffins, not cupcakes, though, since they have a more dense, somewhat tighter crumb with an irregular top with lots more texture than a smooth, gluten free chocolate cupcake top that’s just patiently waiting for its frosting. Muffins are usually less sweet than cupcakes, since they’re for breakfast after all!

Do you have to use liners in your muffin tin to make these chocolate muffins?

No! You can use a cooking oil spray to grease the wells of your muffin tin instead of using liners. I usually prefer to use greaseproof liners, though, since no muffin tin is perfect, and especially as they age, they tend to have spots to which the batter will stick no matter how well you grease the tin. And that can lead to a muffin that’s stuck to the tin and simply can’t be removed without breaking it into pieces.

Can you make these into gluten free chocolate zucchini muffins?

No, you can’t add zucchini to these muffins, but you can make our gluten free chocolate zucchini cake if you’re craving that sort of treat!

Can you add banana to these gluten free chocolate muffins?

I don’t recommend that you replace any of the ingredients in this recipe with banana, as it’s not a proper substitute for oil, which adds pure fat without any moisture. Instead, try our gluten free chocolate banana bread.

Can I make these gluten free chocolate muffins without chocolate chips?

Yes! You can leave out the chips entirely, replace them with another flavor of chips like gluten free peanut butter chips, or replace them with an equal amount, by weight, of chopped soft nuts. Raw walnuts or pecans would be great!

Gluten Free Chocolate Muffins raw, baked and sliced

Rich Gluten Free Chocolate Muffins

These gluten free chocolate muffins have the big, bakery-style dome that everyone loves, plus tons of rich chocolate flavor. They’re so satisfying for breakfast!

Course: Breakfast, Muffins

Cuisine: American

Prep Time: 15 minutes

Cook Time: 18 minutes

Yield: 12 muffins

Author: Nicole Hunn

Ingredients

  • 4 ounces dark or semi-sweet baking chocolate chopped
  • 6 tablespoons (84 g) neutral oil canola, grapeseed, vegetable, peanut oils all work
  • ½ cup (40 g) unsweetened cocoa powder I prefer Dutch-processed, but natural cocoa powder works, too
  • ½ cup (100 g) granulated sugar
  • ½ cup (109 g) packed light brown sugar
  • 1 (50 g (weighed out of shell)) egg at room temperature
  • 1 cup (8 fluid ounces) buttermilk at warm room temperature
  • 2 teaspoons pure vanilla extract
  • 1 ¾ cups (245 g) all-purpose gluten free flour blend (I used Better Batter; please click thru for full info on appropriate blends)
  • ¾ teaspoon xanthan gum (omit if your blend already contains it)
  • 1 teaspoon baking powder
  • ¾ teaspoon baking soda
  • ¼ teaspoon kosher salt
  • 6 ounces semi-sweet chocolate chips

Instructions

  • Preheat your oven to 375°F. Grease or line a standard 12-cup muffin tin, and set it aside.

  • In a medium-size, heat-safe bowl, place the chopped chocolate and place over a small pot of simmering water, making sure the water in the pot doesn’t touch the bowl. Melt the chocolate, stirring occasionally, until smooth.

  • Remove the melted chocolate from the heat, and add the oil, then the cocoa powder, whisking until smooth after each addition.

  • To the chocolate mixture, add the granulated sugar, then the brown sugar, whisking to combine after each addition. Break up any lumps in the brown sugar.

  • Crack the egg open into the chocolate mixture, and whisk the egg into the mixture until smooth.

  • Next, add the buttermilk and vanilla, and whisk again until smooth. The mixture will be thick but very soft.

  • In a separate large bowl, place the flour, xanthan gum, baking powder, baking soda, and salt, and whisk to combine well.

  • Create a well in the center of the dry ingredients, add the entire chocolate mixture, and mix until just combined. The batter will be thick but should be relatively shiny and soft.

  • Mix in the chocolate chips. You can reserving a few chips to scatter on top of the muffin batter in the wells of the muffin tin, if you prefer.

  • Fill the prepared wells of the muffin tin almost completely with muffin batter. Shake the tin vigorously from side to side to help distribute the batter evenly in each well. Top with any reserved chocolate chips.

  • Place the tin in the center of the preheated oven and bake for 5 minutes.

  • Reduce the oven temperature to 350°F, and continue to bake for about 13 minutes, or until the muffin tops are firm to the touch. Do not overbake or the muffins may burn.

  • Remove from the oven and allow to cool in the tin for 5 minutes before transferring to a wire rack to cool completely.

Notes

Originally published on the blog in 2014; in 2023, recipe changed to make muffins richer and more tender, text resources, new photos and video added.

Rich Gluten Free Chocolate Muffins

These gluten free chocolate muffins have the big, bakery-style dome that everyone loves, plus tons of rich chocolate flavor. They’re so satisfying for breakfast!

Course: Breakfast, Muffins

Cuisine: American

Prep Time: 15 minutes

Cook Time: 18 minutes

Yield: 12 muffins

Author: Nicole Hunn

Ingredients

  • 4 ounces dark or semi-sweet baking chocolate chopped
  • 6 tablespoons (84 g) neutral oil canola, grapeseed, vegetable, peanut oils all work
  • ½ cup (40 g) unsweetened cocoa powder I prefer Dutch-processed, but natural cocoa powder works, too
  • ½ cup (100 g) granulated sugar
  • ½ cup (109 g) packed light brown sugar
  • 1 (50 g (weighed out of shell)) egg at room temperature
  • 1 cup (8 fluid ounces) buttermilk at warm room temperature
  • 2 teaspoons pure vanilla extract
  • 1 ¾ cups (245 g) all-purpose gluten free flour blend (I used Better Batter; please click thru for full info on appropriate blends)
  • ¾ teaspoon xanthan gum (omit if your blend already contains it)
  • 1 teaspoon baking powder
  • ¾ teaspoon baking soda
  • ¼ teaspoon kosher salt
  • 6 ounces semi-sweet chocolate chips

Instructions

  • Preheat your oven to 375°F. Grease or line a standard 12-cup muffin tin, and set it aside.

  • In a medium-size, heat-safe bowl, place the chopped chocolate and place over a small pot of simmering water, making sure the water in the pot doesn’t touch the bowl. Melt the chocolate, stirring occasionally, until smooth.

  • Remove the melted chocolate from the heat, and add the oil, then the cocoa powder, whisking until smooth after each addition.

  • To the chocolate mixture, add the granulated sugar, then the brown sugar, whisking to combine after each addition. Break up any lumps in the brown sugar.

  • Crack the egg open into the chocolate mixture, and whisk the egg into the mixture until smooth.

  • Next, add the buttermilk and vanilla, and whisk again until smooth. The mixture will be thick but very soft.

  • In a separate large bowl, place the flour, xanthan gum, baking powder, baking soda, and salt, and whisk to combine well.

  • Create a well in the center of the dry ingredients, add the entire chocolate mixture, and mix until just combined. The batter will be thick but should be relatively shiny and soft.

  • Mix in the chocolate chips. You can reserving a few chips to scatter on top of the muffin batter in the wells of the muffin tin, if you prefer.

  • Fill the prepared wells of the muffin tin almost completely with muffin batter. Shake the tin vigorously from side to side to help distribute the batter evenly in each well. Top with any reserved chocolate chips.

  • Place the tin in the center of the preheated oven and bake for 5 minutes.

  • Reduce the oven temperature to 350°F, and continue to bake for about 13 minutes, or until the muffin tops are firm to the touch. Do not overbake or the muffins may burn.

  • Remove from the oven and allow to cool in the tin for 5 minutes before transferring to a wire rack to cool completely.

Notes

Originally published on the blog in 2014; in 2023, recipe changed to make muffins richer and more tender, text resources, new photos and video added.

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